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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000123873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 39750.9 Da PI: 6.1859 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.8 | 6.9e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++q+G g+W++ ++ g++R++k+c++rw +yl MDP0000123873 14 KGPWTPEEDQKLVQYIEQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.9e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W+tIa ++ gRt++++k++w+++l MDP0000123873 67 RGKFSEEEEQTILHLHSILGNK-WSTIATHLD-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.116 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.92 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MGRSPCCDES GLKKGPWTPE EDQKLVQYIE QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEQTILH LHSILGNKWS TIATHLDGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHQPRT DLFSNLSQLL ALANLQDLMQ QYQPLDHINQ HDATLHADQA VQLTKLQYIE 180 HLLQSVAYTS NNDTYTQNRS TEMEMDDQAF NLLSSINIPP SKETPNFNSL QLENPSSFSH 240 GYGGNSSQPL HHLQSLLPHD LADPQVAFSS LPSLNNSNHE VGQGSNFTVV RGQEKNPSDE 300 SSWFNNLVSP TASIPPTSNV PGDAYCSRSS YGGRSSDSSS YWPDLFLEDA NYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008368426.1 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
TrEMBL | M5XKW7 | 0.0 | M5XKW7_PRUPE; Uncharacterized protein | ||||
STRING | GLYMA04G11040.1 | 1e-138 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 3e-93 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000123873 |